The "Doors in Interior Walls", "Windows in Interior Walls" , etc. layers are created during importing the file into PlotMaker. These layers should only appear in PlotMaker, and definitely not in ArchiCAD. If these appeared in ArchiCAD just on their own, it is a bug.
As new layers are hidden in all layer combos, your output in PlotMaker will also have the doors and wall ends - which are on "Windows in Interior Walls" layer in your case - hidden.
The workaround of course is to make these layers visible in the layer combinations, once they appeared. Or simply delete them.
Greg
Gergely Kmethy
VP, Customer Success, Graphisoft