Hello,
Sorry for the late reply, I did some tests.
In the first post in this thread, felcunha said that it works fine if he turns "without junctions" on. That is indeed true, because that means that Priority Based Connections will be removed, and each element will be exported plain and simple.
But in jameshart's case, it is indeed caused by the SEO on that wall (so just turning junctions off won't help, sorry I wasn't clear about this). There is an option above this one that is related to Solid Element Operations (and the one you linked the article about). This actually controls Solid Element Operations and cuts/trims as well. Here you have the option to export as BREP (for perfect representation) or extruded/revolved. Unfortunately because of some limitations of IFC, elements that have SEOs applied to them can't be exported as 'standardCase' Wall with either settings. The Reference guide (and the article you linked from it) is not really clear about this behavior, so I let the responsible person know, and we will try to correct this.
So, those walls will only go out as standard case wall (and thus having all the necessary skin thickness information) if you remove the SEOs prior to export.
I hope it is clearer now.
Daniel Alexander Kovacs
Professional Services Consultant
GRAPHISOFT
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