It must be the same complex profile (same attribute index number), but they may have different modifiers.
One of them may have been changed slightly (the actual complex profile modifiers edited) and not the other, so they don't actually do the same thing.
In the file that is not correct, open the Attribute Manager and import (overwrite by index number) that complex profile from the good file.
That should update it so it has all of the same settings.
It is a bit of an art to keep all of the attributes exactly the same in multiple files.
Very important to do when you are hot linking or copy & pasting between files.
One of the forum moderators.
Versions 6.5 to 25
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