I had more often "corrupted" files. But AC mentioned that itself and fixed it in a more or less data-loss way.
Try to open your project without the old TUBE-object in load library (move temporarily in an external folder).
Now have a look on the fat points and see which objects are missing indeed.
I do not think, that your project is corrupted, I think, that reason is found in the library parts or handling.
Another try: Open it in AC14. There you can find better informations about objects, which are duplicated in library, in plan and of placed or unplaced objects.
If you open the objects, the
complete GUID, found in objects subtype has to be different. See
GUID