This is standard behavior.
You can avoid it if you place the Beams on a separate layer and set the Layer Intersection Number of that layer to something different from that of the Slab's Layer.
If the intersection of the Layers of Beams and the Slabs are not the same, no intersection will occur in 3D.
Just remember that the Layer Intersection Number may need to be modified for other Layer Combinations as well.
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