Aron1:
One option is to use a
Solid Elements Operation, in the Help files see: Virtual Building > Element Extras: TrussMaker, Solid Element Operations > Solid Element Operations. Simply: add an element (Wall or Slab in this instance) that covers the part of the Wall to be subtracted, use it as an Operator to Subtract the Target (Wall), then place the Operator on a hidden layer (do not delete it). For Walls this will affect the 3D Model, but not the 2D plan view.
You should add a Signature to your Profile (click the Profile button near the top of this page) with your ArchiCAD version and operating system (see mine for an example) for more accurate help in this forum.
David