The dots are from unloaded library parts. 
As to overlapping fills and linework you can use the consolidation commands under 
Edit>Reshape> Unify, fill consolidation & Linework consolidation. The help menu>archicad help will take you to the sections of the manual that will explain these.
					
				
			
			
				
	Erika 
Architect, Consultant
MacBook Pro Retina, 15-inch Yosemite 2.8 GHz Intel Core i7 16 GB 1600 MHz DDR3
Mac OSX 10.11.1
AC5-18
Onuma System
"Implementing Successful Building Information Modeling"