Select the window and change its Floor Plan and Section display to Symbolic.
With these types of situations you have to think through the wall display (All relevant stories?) and then separately the display settings for each window and door.
I notice that if my door has a threshold the cover fill for the display will mask any window above.
Erika
Architect, Consultant
MacBook Pro Retina, 15-inch Yosemite 2.8 GHz Intel Core i7 16 GB 1600 MHz DDR3
Mac OSX 10.11.1
AC5-18
Onuma System
"Implementing Successful Building Information Modeling"